Bibliografia e material complementar
Bibliografia e material complementar
Slides do Curso
Slides do Curso
Livros recomendados
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids. R. Durbin, S. Eddy, A. Krogh, and G. Mitchison. Cambridge University Press, 1998.
Computational Genome Analysis An Introduction, Richard Deonier, S Tavaré, and Michael S. Waterman, Springer Verlag, 2005.
Material de Apoio
Introdução a Biologia Molecular:
L. Hunter.
Life and Its Molecules: A Brief Introduction.
AI Magazine 25(1):9-22, 2004. Uma versĂŁo mais antiga mas mais detalhada estĂĄ como
introduction to molecular biology for the computer scientist
Livro WEB:
Genomes
, T.A. Brown
Livro WEB:
Molecular Cell Biology
by Lodish, Berk, Matsudaira, Kaiser, Krieger, Scott, Zipursky, and Darnell
Alinhamento de Pares de SequĂȘncias:
SecçÔes 2.1-2.7 de Durbin et. al.
Needleman & Wunsch
Smith & Waterman
BLAST
Gapped BLAST e PSI-BLAST
BLOSUM
Alinhamento MĂșltiplo:
SecçÔes 6.1-6.4 de Durbin et. al.
CLUSTAL-W
T-COFFEE
MUSCLE
PROBCONS
Modelos de Markov e AnĂĄlise de Genes:
CapĂtulo 3 de Durbin et. al.
GeneMark
Glimmer
Genscan
pHMMs:
SecçÔes 5.2-5.4 de Durbin et. al.
HMMer
SAM
ISMB99 Tutorial
Survey de 1998
Pfam
Artigo da Juliana
Ărvores FilogenĂ©ticas:
Cap 6 e SecçÔes 7.1-7.4 de Durbin et. al.
Phylip
MrBayes
Tree Of Life
Tutorial ISMB 2005
ExpressĂŁo de Genes:
Eisen e outros, PNAS 1988
Tutorial de Baldi (ISMB02)
Tutorial de Page & Shavlik (ICML03)
Biclusters
Open-Source Clustering Software
Estrutura de ProteĂnas:
Zhang: The protein structure prediction problem could be solved using the current PDB library
Rosetta
Krippahl e Barahona
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MIT Open Courseware
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VĂtor Santos Costa, October 9, 2012
Bibliografia e material complementar